Detailed information of matrix profile MA1527.2

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Profile summary
Name: NFIC
Matrix ID: MA1527.2
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 22456058
Uniprot ID: P08651  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 154 0 0 0 0 2118 379 417 531 461 0 0 0 2118 2118 ]
C [ 1032 0 0 13 2118 97 881 678 492 694 0 2118 2118 5 65 ]
G [ 19 0 2118 2118 0 340 382 580 705 268 2118 3 0 0 616 ]
T [ 1086 2118 3 0 0 203 476 443 389 696 100 0 0 0 167 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1527.1 MA1527 1 NFIC Homo sapiens
Nuclear factor 1 SMAD/NF-1 DNA-binding domain factors
MA1527.2 MA1527 2 NFIC Homo sapiens
Nuclear factor 1 SMAD/NF-1 DNA-binding domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: