Detailed information of matrix profile MA1728.1

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Profile summary
Name: ZNF549
Matrix ID: MA1728.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 27852650
Uniprot ID: Q6P9A3  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 705 1397 436 188 231 153 4295 78 105 3497 838 1002 ]
C [ 1780 889 75 98 177 4566 128 77 4489 498 1404 1575 ]
G [ 787 713 4133 4435 4364 80 175 4622 161 349 1430 1009 ]
T [ 1555 1828 183 106 55 28 229 50 72 483 1155 1241 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1728.1 MA1728 1 ZNF549 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA1728.2 MA1728 2 ZNF549 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0921.1

ChIP-seq Centrality
-log(P-value): 555.943

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0921.1

ChIP-seq Centrality
-log(P-value): 478.031

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: