Detailed information of matrix profile MA1999.1

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Profile summary
Name: Prdm5
Matrix ID: MA1999.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type:
Validation: 22589746
Uniprot ID: Q9CXE0  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 132 105 36 59 18 20 39 16 22 575 18 43 88 157 144 ]
C [ 362 162 60 86 43 677 31 677 685 81 59 518 145 208 230 ]
G [ 95 177 580 50 37 13 20 30 18 40 128 86 67 205 211 ]
T [ 151 296 64 545 642 30 650 17 15 44 535 93 440 170 155 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1999.1 MA1999 1 Prdm5 Mus musculus
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA1999.2 MA1999 2 Prdm5 Mus musculus
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     

-log(P-value) = 0.0

TFFM details

TFFM ID: TFFM0966.1

ChIP-seq Centrality
-log(P-value): 264.241

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0966.1

ChIP-seq Centrality
-log(P-value): 513.845

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: