Detailed information of matrix profile MA2010.1

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Profile summary
Name: SMB
Matrix ID: MA2010.1
Class: GCM domain factors
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 20935069
Uniprot ID: Q9MA17  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 786 1013 153 178 232 45 80 42 466 1089 1241 ]
C [ 740 716 29 64 33 3530 25 35 553 758 488 ]
G [ 1078 1004 33 115 3329 21 251 45 2165 616 851 ]
T [ 998 869 3387 3245 8 6 3246 3480 418 1139 1022 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2010.1 MA2010 1 SMB Arabidopsis thaliana
NAC GCM domain factors
MA2010.2 MA2010 2 SMB Arabidopsis thaliana
NAC GCM domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0971.1

ChIP-seq Centrality
-log(P-value): 3538.13

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0971.1

ChIP-seq Centrality
-log(P-value): 3573.65

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: