Detailed information of matrix profile MA2021.1

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Profile summary
Name: LBD13
Matrix ID: MA2021.1
Class: Other C4 zinc finger-type factors
Family: LBD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 17913740
Uniprot ID: Q9AT61  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 267 329 221 628 18 8 9 72 17 39 635 198 309 ]
C [ 148 306 112 143 980 16 8 168 4 20 145 116 180 ]
G [ 370 125 369 227 11 1021 1031 6 1018 979 44 494 382 ]
T [ 270 295 353 57 46 10 7 809 16 17 231 247 184 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2021.1 MA2021 1 LBD13 Arabidopsis thaliana
LBD Other C4 zinc finger-type factors
MA2021.2 MA2021 2 LBD13 Arabidopsis thaliana
LBD Other C4 zinc finger-type factors
     

-log(P-value) = 129.025

TFFM details

TFFM ID: TFFM0980.1

ChIP-seq Centrality
-log(P-value): 712.876

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0980.1

ChIP-seq Centrality
-log(P-value): 717.824

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: