Detailed information of matrix profile UN0403.1

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Profile summary

Name: JGL
Matrix ID: UN0403.1
Class: C2H2 zinc finger factors
Family:
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q6S592  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 212 923 993 0 0 85 382 563 498 50 40 ]
C [ 78 27 0 988 30 87 237 190 7 108 82 ]
G [ 313 47 0 12 7 815 267 40 458 427 25 ]
T [ 397 3 7 0 963 13 115 207 37 415 853 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0403.1 UN0403 1 JGL Arabidopsis thaliana
C2H2 zinc finger factors
UN0403.2 UN0403 2 JGL Arabidopsis thaliana
C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: