Detailed information of matrix profile UN0458.1

  1. Home
  2. Matrix > UN0458.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: Nkx2-3-5-6
Matrix ID: UN0458.1
Class: Homeo domain factors
Family: NK
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID:  
Source: 31267468
Comment: No UniProt ID found.

Sequence logo

Frequency matrix

         
A [ 287 294 316 303 291 351 321 135 10 929 15 5 16 507 574 313 311 270 278 294 ]
C [ 213 214 209 214 217 189 225 630 949 16 976 7 62 139 92 274 253 282 286 289 ]
G [ 228 234 237 249 261 254 267 197 4 8 3 3 4 281 110 273 202 196 197 184 ]
T [ 271 257 238 234 232 206 186 38 37 47 5 984 918 73 224 140 234 251 240 233 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0458.1 UN0458 1 Nkx2-3-5-6 Ciona intestinalis
NK Homeo domain factors
UN0458.2 UN0458 2 Nkx2-3-5-6 Ciona intestinalis
NK Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: