Detailed information of matrix profile UN0468.1

  1. Home
  2. Matrix > UN0468.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: Sall-b
Matrix ID: UN0468.1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID:  
Source: 31267468
Comment: No UniProt ID found.

Sequence logo

Frequency matrix

         
A [ 298 290 326 312 301 365 332 61 839 856 14 918 72 265 234 309 292 321 303 301 ]
C [ 201 196 189 180 168 179 127 70 60 19 27 8 75 176 308 194 212 195 209 193 ]
G [ 209 217 211 195 179 164 160 98 50 28 7 58 27 260 178 213 185 164 169 197 ]
T [ 291 298 274 313 352 292 380 770 52 97 952 15 827 299 280 284 311 321 318 309 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0468.1 UN0468 1 Sall-b Ciona intestinalis
Factors with multiple dispersed zinc fingers C2H2 zinc finger factors
UN0468.2 UN0468 2 Sall-b Ciona intestinalis
Factors with multiple dispersed zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: