JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0119.1 NFIC::TLX1 Homo sapiens SMAD/NF-1 DNA-binding domain factors::Homeo domain factors Nuclear factor 1::NK
MA0121.1 ARR10 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0121.2 ARR10 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0122.1 Nkx3-2 Mus musculus Homeo domain factors NK
MA0122.2 NKX3-2 Homo sapiens Homeo domain factors NK
MA0122.3 Nkx3-2 Mus musculus Homeo domain factors NK
MA0122.4 Nkx3-2 Mus musculus Homeo domain factors NK
MA0123.1 abi4 Zea mays AP2/EREBP ERF/DREB
MA0124.1 NKX3-1 Homo sapiens Homeo domain factors NK
MA0124.2 Nkx3-1 Mus musculus Homeo domain factors NK
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.