Detailed information of matrix profile MA0016.2

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Profile summary
Name: usp
Matrix ID: MA0016.2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Insects
Species: Drosophila melanogaster
Data Type: SELEX
Validation: 1280827
Uniprot ID: P20153  
Source:
Comment: Class and TF information is inferred from the human ortholog to usp, obtained from Flybase.

Sequence logo

Frequency matrix

         
A [ 3 5 0 1 38 0 0 1 0 ]
C [ 22 3 3 1 0 38 38 36 37 ]
G [ 8 25 0 36 0 0 0 0 1 ]
T [ 5 5 35 0 0 0 0 1 0 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0016.1 MA0016 1 usp Drosophila melanogaster
Nuclear receptors with C4 zinc fingers
MA0016.2 MA0016 2 usp Drosophila melanogaster
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: