Detailed information of matrix profile MA0159.1

Profile summary

Name: RARA::RXRA
Matrix ID: MA0159.1
Class: Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: COMPILED
Validation: 17916232
Uniprot ID: P10276   P19793  
Pazar TF: TF0000788
TFBSshape ID: 148
TFencyclopedia IDs: 337
Source:
Comment: Dimer. Annotations from PAZAR RXR/RAR_HUMAN (TF0000788) in the RARE project.

Sequence logo

Frequency matrix

A [ 12 0 1 0 0 22 4 5 5 13 5 17 1 0 2 1 21 ]
C [ 0 0 0 0 18 0 7 8 4 1 6 3 1 1 1 17 0 ]
G [ 11 23 13 1 3 1 5 9 11 7 12 3 20 16 3 3 1 ]
T [ 0 0 9 22 2 0 7 1 3 2 0 0 1 6 17 2 1 ]

Binding sites information

TFBS profiles