Detailed information of matrix profile MA0693.1

Profile summary

Name: Vdr
Matrix ID: MA0693.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 8065900
Uniprot ID: P48281  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs: 348
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 5712 20648 8 5 267 43 35680 3643 6013 5903 20690 6 2 263 7 37729 ]
C [ 1471 11 5 13 455 46948 130 8775 12672 2186 14 2 7 391 45781 137 ]
G [ 23911 12584 28323 3866 919 62 3649 1638 2619 22959 12607 28372 2512 1241 73 4040 ]
T [ 173 1 11 29506 30107 884 210 19613 13845 464 3 5 29193 28965 1671 149 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.