Detailed information of matrix profile MA0729.1

Profile summary

Name: RARA
Matrix ID: MA0729.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P10276  
Pazar TF: TF0000449
TFBSshape ID:
TFencyclopedia IDs: 337
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 250 507 0 1 0 2 528 526 526 522 0 0 3 0 540 539 2 0 ]
C [ 1 1 0 0 5 707 0 0 0 5 0 0 0 705 0 36 0 115 ]
G [ 513 35 745 746 1 26 4 28 3 4 759 754 0 0 1 30 228 226 ]
T [ 4 0 0 19 559 0 0 162 37 0 1 101 546 2 0 181 328 212 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.