Detailed information of matrix profile MA0860.1

Profile summary

Name: Rarg(var.2)
Matrix ID: MA0860.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P18911  
Pazar TF: TF0000797
TFBSshape ID:
TFencyclopedia IDs: 389
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

A [ 4074 4543 0 0 0 2 4044 1394 314 3248 2745 3603 0 0 14 7 4764 ]
C [ 10 7 4 0 11 6256 3 2677 1778 482 58 32 0 8 2 5340 5 ]
G [ 806 267 5888 5573 12 0 12 386 2442 558 2133 838 5891 5040 0 2 6 ]
T [ 31 0 2 200 4309 0 0 780 595 479 57 2 1 319 4540 22 0 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.