Detailed information of matrix profile MA1000.2

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Profile summary
Name: ERF105
Matrix ID: MA1000.2
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q8VY90  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 106 111 17 62 21 0 0 16 0 0 229 48 117 220 107 ]
C [ 330 60 382 523 0 585 586 0 565 586 0 312 257 36 278 ]
G [ 27 204 109 0 544 1 0 569 0 0 307 37 44 181 57 ]
T [ 123 211 78 1 21 0 0 1 21 0 50 189 168 149 144 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1000.1 MA1000 1 ERF105 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1000.2 MA1000 2 ERF105 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1000.3 MA1000 3 ERF105 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0329.1

ChIP-seq Centrality
-log(P-value): 4027.28

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0329.1

ChIP-seq Centrality
-log(P-value): 3838.15

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: