Detailed information of matrix profile MA1047.2

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Profile summary
Name: TGA5
Matrix ID: MA1047.2
Class: Basic leucine zipper factors (bZIP)
Family: Group D
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q39163  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 858 743 1321 49 49 3045 4 284 42 276 3026 164 508 1197 912 ]
C [ 603 443 612 147 140 16 2804 22 23 2769 10 474 1574 537 554 ]
G [ 530 1257 973 9 2650 23 16 2802 11 26 57 540 382 560 511 ]
T [ 1121 669 206 2907 273 28 288 4 3036 41 19 1934 648 818 1135 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1047.1 MA1047 1 TGA5 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1047.2 MA1047 2 TGA5 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1047.3 MA1047 3 TGA5 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0405.2

ChIP-seq Centrality
-log(P-value): 3077.71

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0405.2

ChIP-seq Centrality
-log(P-value): 3101.96

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: