Detailed information of matrix profile MA1069.2

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Profile summary
Name: TGA6
Matrix ID: MA1069.2
Class: Basic leucine zipper factors (bZIP)
Family: Group D
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 8487298 8487298
Uniprot ID: Q39140  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 512 462 1263 15 24 1763 8 910 16 45 1868 129 373 682 543 ]
C [ 385 331 233 23 23 14 1846 30 9 1827 4 298 856 324 361 ]
G [ 304 721 296 3 1803 18 24 945 9 10 10 284 225 356 297 ]
T [ 702 389 111 1862 53 108 25 18 1869 21 21 1192 449 541 702 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1069.1 MA1069 1 TGA6 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1069.2 MA1069 2 TGA6 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1069.3 MA1069 3 TGA6 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
     

-log(P-value) = 2344.75

TFFM details

TFFM ID: TFFM0818.1

ChIP-seq Centrality
-log(P-value): 5076.42

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0818.1

ChIP-seq Centrality
-log(P-value): 5064.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: