Detailed information of matrix profile MA1156.2

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Profile summary
Name: JKD
Matrix ID: MA1156.2
Class: C2H2 zinc finger factors
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q700D2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 427 509 406 525 172 21 583 0 586 587 553 452 ]
C [ 8 0 34 42 331 0 13 596 0 4 13 31 ]
G [ 27 0 99 20 62 564 0 0 10 5 24 30 ]
T [ 134 87 57 9 31 11 0 0 0 0 6 83 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1156.1 MA1156 1 JKD Arabidopsis thaliana
C2H2 zinc finger factors
MA1156.2 MA1156 2 JKD Arabidopsis thaliana
IDD C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: