Detailed information of matrix profile MA1157.2

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Profile summary
Name: NUC
Matrix ID: MA1157.2
Class: C2H2 zinc finger factors
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9FFH3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 70 8 0 0 0 0 0 18 3 63 74 148 ]
C [ 47 33 5 8 0 0 570 51 19 89 0 41 ]
G [ 42 19 8 0 570 5 0 381 33 46 3 15 ]
T [ 411 510 557 562 0 565 0 120 515 372 493 366 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1157.1 MA1157 1 NUC Arabidopsis thaliana
C2H2 zinc finger factors
MA1157.2 MA1157 2 NUC Arabidopsis thaliana
IDD C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: