Detailed information of matrix profile MA1159.2

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Profile summary
Name: SGR5
Matrix ID: MA1159.2
Class: C2H2 zinc finger factors
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: F4IPE3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 343 340 433 310 486 532 33 591 0 592 598 560 428 ]
C [ 57 48 0 16 22 4 0 6 599 1 1 10 34 ]
G [ 160 116 44 27 92 22 566 0 1 7 0 11 21 ]
T [ 40 96 123 247 0 42 1 3 0 0 1 19 117 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1159.1 MA1159 1 SGR5 Arabidopsis thaliana
C2H2 zinc finger factors
MA1159.2 MA1159 2 SGR5 Arabidopsis thaliana
IDD C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: