Detailed information of matrix profile MA1160.1

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Profile summary
Name: IDD6
Matrix ID: MA1160.1
Class: C2H2 zinc finger factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q8RWX7  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 72 168 24 171 201 190 217 54 3 225 1 235 240 231 191 133 115 107 115 113 ]
C [ 117 4 108 1 6 13 14 154 0 15 240 1 0 5 11 28 28 32 34 32 ]
G [ 15 66 89 5 0 32 9 21 237 2 1 6 2 6 15 23 27 43 32 36 ]
T [ 38 4 21 65 35 7 2 13 2 0 0 0 0 0 25 58 72 60 61 61 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1160.1 MA1160 1 IDD6 Arabidopsis thaliana
C2H2 zinc finger factors
MA1160.2 MA1160 2 IDD6 Arabidopsis thaliana
IDD C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: