Detailed information of matrix profile MA1209.1

  1. Home
  2. Matrix > MA1209.1

Profile summary
Name: ATHB-20
Matrix ID: MA1209.1
Class: Homeo domain factors
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11247607
Uniprot ID: Q8LAT0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 41 30 229 230 0 3 230 0 0 83 90 ]
C [ 31 110 0 0 0 9 0 0 0 2 23 ]
G [ 27 19 1 0 0 0 0 0 0 115 59 ]
T [ 131 71 0 0 230 218 0 230 230 30 58 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1209.1 MA1209 1 ATHB-20 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA1209.2 MA1209 2 ATHB-20 Arabidopsis thaliana
HD-ZIP Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: