Detailed information of matrix profile MA1320.1

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Profile summary
Name: SPL15
Matrix ID: MA1320.1
Class: C2H2 zinc finger factors
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 16554053
Uniprot ID: Q9M2Q6  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 42 53 20 5 2 0 0 246 0 180 116 61 59 63 ]
C [ 66 18 3 241 244 0 0 0 241 16 33 28 43 62 ]
G [ 44 106 4 0 0 246 0 0 0 45 58 29 33 30 ]
T [ 94 69 219 0 0 0 246 0 5 5 39 128 111 91 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1320.1 MA1320 1 SPL15 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1320.2 MA1320 2 SPL15 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: