Detailed information of matrix profile MA1365.1

  1. Home
  2. Matrix > MA1365.1

Profile summary
Name: AT5G47660
Matrix ID: MA1365.1
Class: Tryptophan cluster factors
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FGJ1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 143 28 80 0 0 165 244 213 199 191 109 91 93 105 139 ]
C [ 6 169 10 0 0 0 0 10 0 25 46 25 14 33 13 ]
G [ 83 24 142 244 0 8 0 15 1 8 21 63 73 30 18 ]
T [ 12 23 12 0 244 71 0 6 44 20 68 65 64 76 74 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1365.1 MA1365 1 AT5G47660 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
MA1365.2 MA1365 2 AT5G47660 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
MA1365.3 MA1365 3 AT5G47660 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: