Detailed information of matrix profile MA1396.2

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Profile summary
Name: GATA6
Matrix ID: MA1396.2
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9SD38  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 391 0 417 0 0 0 345 93 298 94 ]
C [ 0 0 0 0 417 69 0 57 50 47 ]
G [ 22 417 0 0 0 6 72 244 30 40 ]
T [ 4 0 0 417 0 342 0 23 39 236 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1396.1 MA1396 1 GATA6 Arabidopsis thaliana
C4-GATA-related Other C4 zinc finger-type factors
MA1396.2 MA1396 2 GATA6 Arabidopsis thaliana
C4-GATA-related Other C4 zinc finger-type factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: