Detailed information of matrix profile MA1450.1

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Profile summary
Name: lin-54
Matrix ID: MA1450.1
Class: CRC domain
Family:
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation: 21589891
Uniprot ID: Q95QD7  
Source: 30413482
Comment: Matches the consensus TTYRAA

Sequence logo

Frequency matrix

         
A [ 1460 1636 2433 97 21 16 250 2899 2892 124 129 479 267 328 ]
C [ 697 338 29 17 11 109 19 23 5 98 109 554 1744 1823 ]
G [ 346 159 158 13 14 51 2612 11 27 16 93 174 393 351 ]
T [ 444 814 327 2820 2901 2771 66 14 23 2709 2616 1740 543 445 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1450.1 MA1450 1 lin-54 Caenorhabditis elegans
CRC domain
MA1450.2 MA1450 2 lin-54 Caenorhabditis elegans
CRC domain
     

-log(P-value) = 697.785

TFFM details

TFFM ID: TFFM0521.1

ChIP-seq Centrality
-log(P-value): 923.883

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0521.1

ChIP-seq Centrality
-log(P-value): 1048.52

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: