Detailed information of matrix profile MA1527.1

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Profile summary
Name: NFIC
Matrix ID: MA1527.1
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 22456058
Uniprot ID: P08651  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 412 154 0 0 0 0 2118 379 417 531 461 0 0 0 2118 2118 399 ]
C [ 647 1032 0 0 13 2118 97 881 678 492 694 0 2118 2118 5 65 761 ]
G [ 695 19 0 2118 2118 0 340 382 580 705 268 2118 3 0 0 616 560 ]
T [ 364 1086 2118 3 0 0 203 476 443 389 696 100 0 0 0 167 398 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1527.1 MA1527 1 NFIC Homo sapiens
Nuclear factor 1 SMAD/NF-1 DNA-binding domain factors
MA1527.2 MA1527 2 NFIC Homo sapiens
Nuclear factor 1 SMAD/NF-1 DNA-binding domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0863.1

ChIP-seq Centrality
-log(P-value): 23068.6

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0863.1

ChIP-seq Centrality
-log(P-value): 23102.9

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: