Detailed information of matrix profile MA1535.1

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Profile summary
Name: NR2C1
Matrix ID: MA1535.1
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 23354101
Uniprot ID: P13056  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 2499 0 0 9622 0 297 55 1316 2225 ]
C [ 2039 1716 321 271 9622 9622 4756 5587 1997 ]
G [ 2786 0 9622 0 0 0 227 1225 2848 ]
T [ 2298 9622 0 0 0 0 4866 4035 2552 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1535.1 MA1535 1 NR2C1 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA1535.2 MA1535 2 NR2C1 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0542.1

ChIP-seq Centrality
-log(P-value): 2032.11

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0542.1

ChIP-seq Centrality
-log(P-value): 2012.82

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: