Detailed information of matrix profile MA1536.1

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Profile summary
Name: NR2C2
Matrix ID: MA1536.1
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 11478808
Uniprot ID: P49116  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 5122 0 4406 18628 4790 1341 0 2861 ]
C [ 3684 6639 1643 1588 18628 18628 8395 6420 ]
G [ 4757 0 18628 0 0 236 719 3111 ]
T [ 5065 18628 0 0 0 0 10232 6236 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1536.1 MA1536 1 NR2C2 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA1536.2 MA1536 2 NR2C2 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0867.1

ChIP-seq Centrality
-log(P-value): 2673.3

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0867.1

ChIP-seq Centrality
-log(P-value): 2641.24

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: