Detailed information of matrix profile MA1546.2

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Profile summary
Name: PAX3
Matrix ID: MA1546.2
Class: Paired box factors
Family: Paired plus homeo domain
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 9632796
Uniprot ID: P23760  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 215 1344 1344 86 467 606 6 0 201 2 263 1344 126 167 ]
C [ 108 52 24 353 138 127 508 1344 2 19 23 6 1344 464 ]
G [ 66 138 43 152 228 414 836 1 1344 2 1344 79 2 880 ]
T [ 1344 83 50 1344 512 197 3 161 13 1344 9 181 1 112 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1546.1 MA1546 1 PAX3 Homo sapiens
Paired plus homeo domain Paired box factors
MA1546.2 MA1546 2 PAX3 Homo sapiens
Paired plus homeo domain Paired box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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