Detailed information of matrix profile MA1552.2

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Profile summary
Name: RARB
Matrix ID: MA1552.2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 1738600
Uniprot ID: P10826  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 371 16 7 13 4 472 3 16 472 76 31 0 56 ]
C [ 45 8 0 18 472 0 150 7 52 472 472 111 169 ]
G [ 101 472 472 26 8 5 0 472 64 4 17 45 30 ]
T [ 10 12 76 472 16 3 322 5 21 10 3 361 217 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1552.1 MA1552 1 RARB Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1552.2 MA1552 2 RARB Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: