Detailed information of matrix profile MA1553.1

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Profile summary
Name: RARG
Matrix ID: MA1553.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 1738600
Uniprot ID: P13631  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 1736 2756 48 12 200 12 3442 22 150 3442 1109 156 108 479 ]
C [ 282 275 18 5 128 3442 13 835 58 323 3442 3442 681 978 ]
G [ 998 687 3442 3442 196 46 50 9 3442 293 28 37 332 296 ]
T [ 427 54 106 997 3442 91 33 2607 28 344 39 111 2761 1689 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1553.1 MA1553 1 RARG Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1553.2 MA1553 2 RARG Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: