Detailed information of matrix profile MA1619.1

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Profile summary
Name: Ptf1A
Matrix ID: MA1619.1
Class: Basic helix-loop-helix factors (bHLH)
Family: Tal-related
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 23754747
Uniprot ID: Q9QX98  
Source: 30462313
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 1871 1974 4341 49 7121 33 223 28 27 529 1216 1607 ]
C [ 1803 2426 1065 7150 40 299 6689 65 28 1308 1629 1974 ]
G [ 1977 1632 1312 27 66 6697 307 41 7149 1070 2430 1803 ]
T [ 1602 1221 535 27 26 224 34 7119 49 4346 1978 1869 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1619.1 MA1619 1 Ptf1A Mus musculus
Tal-related Basic helix-loop-helix factors (bHLH)
MA1619.2 MA1619 2 Ptf1A Mus musculus
Tal-related Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0887.1

ChIP-seq Centrality
-log(P-value): 22464.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0887.1

ChIP-seq Centrality
-log(P-value): 22479.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: