Detailed information of matrix profile MA1664.2

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Profile summary
Name: HSFA6B
Matrix ID: MA1664.2
Class: Heat shock factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 27493213 27493213
Uniprot ID: Q9LUH8  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 234 265 57 23 10 52 1063 15 1114 1051 282 293 ]
C [ 238 364 40 12 1121 660 16 20 9 14 234 413 ]
G [ 397 259 15 7 11 78 50 1108 18 44 412 245 ]
T [ 287 268 1044 1114 14 366 27 13 15 47 228 205 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1664.1 MA1664 1 HSFA6B Arabidopsis thaliana
Heat shock factors
MA1664.2 MA1664 2 HSFA6B Arabidopsis thaliana
Heat shock factors
MA1664.3 MA1664 3 HSFA6B Arabidopsis thaliana
HSF Heat shock factors
     

-log(P-value) = 1117.4

TFFM details

TFFM ID: TFFM0900.1

ChIP-seq Centrality
-log(P-value): 1456.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0900.1

ChIP-seq Centrality
-log(P-value): 1647.79

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: