Detailed information of matrix profile MA1667.2

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Profile summary
Name: HSFC1
Matrix ID: MA1667.2
Class: Heat shock factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 8689565
Uniprot ID: Q9LV52  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 308 358 73 28 12 34 1476 22 1559 1479 447 362 ]
C [ 292 470 45 7 1538 765 9 22 1 12 269 648 ]
G [ 613 305 14 6 15 99 80 1521 9 36 522 299 ]
T [ 367 447 1448 1539 15 682 15 15 11 53 342 271 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1667.1 MA1667 1 HSFC1 Arabidopsis thaliana
Heat shock factors
MA1667.2 MA1667 2 HSFC1 Arabidopsis thaliana
Heat shock factors
MA1667.3 MA1667 3 HSFC1 Arabidopsis thaliana
HSF Heat shock factors
     

-log(P-value) = 2316.38

TFFM details

TFFM ID: TFFM0903.1

ChIP-seq Centrality
-log(P-value): 3018.31

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0903.1

ChIP-seq Centrality
-log(P-value): 3295.91

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: