Detailed information of matrix profile MA1728.1

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Profile summary
Name: ZNF549
Matrix ID: MA1728.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 27852650
Uniprot ID: Q6P9A3  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1241 1155 483 72 50 229 28 55 106 183 1828 1555 ]
C [ 1009 1430 349 161 4622 175 80 4364 4435 4133 713 787 ]
G [ 1575 1404 498 4489 77 128 4566 177 98 75 889 1780 ]
T [ 1002 838 3497 105 78 4295 153 231 188 436 1397 705 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1728.1 MA1728 1 ZNF549 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA1728.2 MA1728 2 ZNF549 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0921.1

ChIP-seq Centrality
-log(P-value): 555.943

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0921.1

ChIP-seq Centrality
-log(P-value): 478.031

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: