Detailed information of matrix profile MA1736.1

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Profile summary
Name: AT5G04390
Matrix ID: MA1736.1
Class: C2H2 zinc finger factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 27203113
Uniprot ID: Q84K31  
Source: 25215497
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 254 1000 0 0 15 559 509 294 205 327 337 ]
C [ 180 0 37 0 0 0 88 120 119 58 83 ]
G [ 277 0 963 0 985 170 132 441 294 214 404 ]
T [ 289 0 0 1000 0 270 270 145 382 401 175 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1736.1 MA1736 1 AT5G04390 Arabidopsis thaliana
C2H2 zinc finger factors
MA1736.2 MA1736 2 AT5G04390 Arabidopsis thaliana
C2H2 C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: