Detailed information of matrix profile MA1758.1

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Profile summary
Name: HSFA1E
Matrix ID: MA1758.1
Class: Heat shock factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 8689565
Uniprot ID: Q9SCW5  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 662 11 987 939 124 210 124 39 2 48 852 2 978 774 191 ]
C [ 67 0 0 4 200 421 33 0 965 85 39 7 7 30 191 ]
G [ 236 987 13 26 588 204 11 11 33 13 108 980 7 87 423 ]
T [ 35 2 0 30 89 165 833 950 0 855 0 11 9 108 195 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1758.1 MA1758 1 HSFA1E Arabidopsis thaliana
Heat shock factors
MA1758.2 MA1758 2 HSFA1E Arabidopsis thaliana
HSF Heat shock factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: