Detailed information of matrix profile MA1801.1

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Profile summary
Name: TREE1
Matrix ID: MA1801.1
Class: C2H2 zinc finger factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 33139535
Uniprot ID: O81793  
Source: 24477691
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 302 267 224 901 0 99 191 504 550 174 223 ]
C [ 297 177 433 0 0 901 0 96 242 477 223 ]
G [ 201 170 27 0 809 0 0 208 158 174 223 ]
T [ 201 386 316 99 191 0 809 191 50 174 331 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1801.1 MA1801 1 TREE1 Arabidopsis thaliana
C2H2 zinc finger factors
MA1801.2 MA1801 2 TREE1 Arabidopsis thaliana
C2H2 C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: