Detailed information of matrix profile MA1803.1

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Profile summary
Name: VIP1
Matrix ID: MA1803.1
Class: Basic leucine zipper factors (bZIP)
Family: Group I
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 23942522
Uniprot ID: Q9MA75  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 254 283 228 562 48 966 12 0 0 0 0 133 743 346 ]
C [ 121 102 169 276 753 0 10 981 0 0 10 850 48 211 ]
G [ 220 346 262 0 97 34 978 0 0 1000 482 0 109 102 ]
T [ 404 269 341 162 102 0 0 19 1000 0 508 17 99 341 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1803.1 MA1803 1 VIP1 Arabidopsis thaliana
Group I Basic leucine zipper factors (bZIP)
MA1803.2 MA1803 2 VIP1 Arabidopsis thaliana
Group I Basic leucine zipper factors (bZIP)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: