Detailed information of matrix profile MA1803.2

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Profile summary
Name: VIP1
Matrix ID: MA1803.2
Class: Basic leucine zipper factors (bZIP)
Family: Group I
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 23942522
Uniprot ID: Q9MA75  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 99 17 508 0 1000 19 0 0 102 162 ]
C [ 109 0 482 1000 0 0 978 34 97 0 ]
G [ 48 850 10 0 0 981 10 0 753 276 ]
T [ 743 133 0 0 0 0 12 966 48 562 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1803.1 MA1803 1 VIP1 Arabidopsis thaliana
Group I Basic leucine zipper factors (bZIP)
MA1803.2 MA1803 2 VIP1 Arabidopsis thaliana
Group I Basic leucine zipper factors (bZIP)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: