Detailed information of matrix profile MA1888.2

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Profile summary
Name: Irf-b
Matrix ID: MA1888.2
Class: Tryptophan cluster factors
Family: Interferon-regulatory factors
Collection: CORE
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation: 32750546
Uniprot ID:  
Source: 31267468
Comment: No UniProt ID found.

Sequence logo

Frequency matrix

         
A [ 31 40 935 672 974 33 21 207 213 648 30 15 312 25 12 ]
C [ 829 14 36 14 4 880 85 388 263 79 168 31 259 70 842 ]
G [ 33 917 19 56 3 71 10 207 226 176 676 14 10 47 22 ]
T [ 107 29 10 259 19 15 883 199 299 97 126 940 419 858 124 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1888.1 MA1888 1 Irf-b Ciona intestinalis
Interferon-regulatory factors Tryptophan cluster factors
MA1888.2 MA1888 2 Irf-b Ciona intestinalis
Interferon-regulatory factors Tryptophan cluster factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: