Detailed information of matrix profile MA1915.2

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Profile summary
Name: SoxB1
Matrix ID: MA1915.2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation: 24680932
Uniprot ID: Q4H2S3  
Source: 31267468
Comment:

Sequence logo

Frequency matrix

         
A [ 861 14 979 855 14 160 254 273 546 300 152 ]
C [ 30 913 7 11 8 37 198 297 170 99 71 ]
G [ 32 30 6 10 5 672 247 148 101 84 66 ]
T [ 77 42 8 124 973 131 301 282 184 517 711 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1915.1 MA1915 1 SoxB1 Ciona intestinalis
SOX-related factors High-mobility group (HMG) domain factors
MA1915.2 MA1915 2 SoxB1 Ciona intestinalis
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: