Detailed information of matrix profile MA2015.1

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Profile summary
Name: NAC002
Matrix ID: MA2015.1
Class: beta-Hairpin exposed by an alpha/beta-scaffold
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 24914054
Uniprot ID: Q39013  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 328 401 893 66 67 32 266 29 28 11 348 331 357 ]
C [ 195 232 63 64 16 13 103 1089 14 3 115 185 229 ]
G [ 259 243 144 1013 16 58 753 13 1096 12 531 152 237 ]
T [ 387 293 69 26 1070 1066 47 38 31 1143 175 501 346 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2015.1 MA2015 1 NAC002 Arabidopsis thaliana
NAC beta-Hairpin exposed by an alpha/beta-scaffold
MA2015.2 MA2015 2 NAC002 Arabidopsis thaliana
NAC GCM domain factors
     

-log(P-value) = 132.679

TFFM details

TFFM ID: TFFM0975.1

ChIP-seq Centrality
-log(P-value): 2735.21

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0975.1

ChIP-seq Centrality
-log(P-value): 2630.84

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: