Detailed information of matrix profile MA2017.1

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Profile summary
Name: JUB1
Matrix ID: MA2017.1
Class: GCM domain factors
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 22345491
Uniprot ID: Q9SK55  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 161 137 274 123 103 9 21 2 3 8 11 62 178 147 ]
C [ 98 139 121 196 82 457 0 492 489 0 10 115 65 132 ]
G [ 102 91 47 122 36 10 476 12 8 492 30 236 153 79 ]
T [ 148 142 67 68 288 33 12 3 9 9 458 96 113 151 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2017.1 MA2017 1 JUB1 Arabidopsis thaliana
NAC GCM domain factors
MA2017.2 MA2017 2 JUB1 Arabidopsis thaliana
NAC GCM domain factors
     

-log(P-value) = 114.758

TFFM details

TFFM ID: TFFM0976.1

ChIP-seq Centrality
-log(P-value): 504.031

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0976.1

ChIP-seq Centrality
-log(P-value): 526.759

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: