Detailed information of matrix profile MA2040.1

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Profile summary
Name: AT5G05550
Matrix ID: MA2040.1
Class: Tryptophan cluster factors
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: F4K0Q7  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 845 482 41 160 24 7 13 105 59 128 1363 597 707 ]
C [ 280 390 1863 13 2244 2283 0 119 2038 68 208 641 289 ]
G [ 463 327 43 328 15 0 2281 2017 10 2037 428 377 796 ]
T [ 710 1099 351 1797 15 8 4 57 191 65 299 683 506 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2040.1 MA2040 1 AT5G05550 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
MA2040.2 MA2040 2 ENAP2 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0987.1

ChIP-seq Centrality
-log(P-value): 804.167

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0987.1

ChIP-seq Centrality
-log(P-value): 773.211

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: