Detailed information of matrix profile MA2184.1

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Profile summary
Name: sox-3
Matrix ID: MA2184.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: yeast 1-hybrid
Validation: 26153233
Uniprot ID: Q20201  
Source: 27777270
Comment: Similar motif from profile inference.

Sequence logo

Frequency matrix

         
A [ 69 58 9 81 89 0 0 23 4 9 ]
C [ 0 0 77 0 0 0 5 11 4 4 ]
G [ 15 15 13 14 0 0 5 65 9 4 ]
T [ 15 26 0 4 10 100 89 0 82 82 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2184.1 MA2184 1 sox-3 Caenorhabditis elegans
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: