Detailed information of matrix profile MA2276.1

  1. Home
  2. Matrix > MA2276.1

Profile summary
Name: Sox21a
Matrix ID: MA2276.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Insects
Species: Drosophila melanogaster
Data Type: SELEX
Validation: 15943880
Uniprot ID: M9PFG6  
Source: 25779349
Comment: Similar motif from profile inference.

Sequence logo

Frequency matrix

         
A [ 653 834 0 998 790 0 2 106 119 995 1 3 0 8 99 ]
C [ 165 26 995 0 206 0 0 224 132 2 2 0 0 34 117 ]
G [ 102 134 0 0 2 2 995 340 5 1 391 0 999 16 178 ]
T [ 78 4 4 0 0 996 1 328 742 0 604 996 0 939 604 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2276.1 MA2276 1 Sox21a Drosophila melanogaster
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: