Detailed information of matrix profile MA2277.1

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Profile summary
Name: Sox21b
Matrix ID: MA2277.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Insects
Species: Drosophila melanogaster
Data Type: SELEX
Validation: 15943880
Uniprot ID: M9PCG2  
Source: 25779349
Comment: Similar motif from profile inference.

Sequence logo

Frequency matrix

         
A [ 996 994 0 995 684 0 441 273 0 998 0 0 1 2 1 ]
C [ 0 1 999 0 313 0 0 172 999 0 0 1 0 0 2 ]
G [ 1 2 0 1 0 0 13 254 0 0 518 0 998 4 1 ]
T [ 1 1 0 3 0 999 544 299 0 0 480 997 0 991 995 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2277.1 MA2277 1 Sox21b Drosophila melanogaster
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: