Detailed information of matrix profile UN0546.2

  1. Home
  2. Matrix > UN0546.2
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: GCM1::HOXB13
Matrix ID: UN0546.2
Class: GCM domain factors::Homeo domain factors
Family: GCM::HOX
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation:
Uniprot ID: Q92826   Q9NP62  
Source: 26550823
Comment:

Sequence logo

Frequency matrix

         
A [ 0 0 36 117 0 36 10 18 4 21 9 23 0 0 ]
C [ 6 10 8 2 22 10 5 24 17 9 117 0 2 3 ]
G [ 45 1 9 0 0 41 99 78 22 117 66 117 117 117 ]
T [ 117 117 117 0 117 76 2 0 117 0 60 29 4 0 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0546.1 UN0546 1 GCM1::HOXB13 Homo sapiens
GCM::HOX GCM domain factors::Homeo domain factors
UN0547.1 UN0547 1 GCM1::HOXB13 Homo sapiens
GCM::HOX GCM domain factors::Homeo domain factors
UN0546.2 UN0546 2 GCM1::HOXB13 Homo sapiens
GCM::HOX GCM domain factors::Homeo domain factors
UN0547.2 UN0547 2 GCM1::HOXB13 Homo sapiens
GCM::HOX GCM domain factors::Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: